|
Status |
Public on Feb 26, 2014 |
Title |
Adipose_abdominal_KT538 |
Sample type |
genomic |
|
|
Source name |
Autopsy
|
Organism |
Homo sapiens |
Characteristics |
tissue: Adipose_abdominal gender: male
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
|
Label |
Cy5 and Cy3
|
Label protocol |
According to Illumina protocol
|
|
|
Hybridization protocol |
According to Illumina protocol
|
Scan protocol |
According to Illumina protocol
|
Data processing |
The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis. matrix processed value definition: Average Beta matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
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|
|
Submission date |
Aug 26, 2013 |
Last update date |
Feb 26, 2014 |
Contact name |
Kaie Lokk |
E-mail(s) |
kaie.lokk@ut.ee
|
Organization name |
University of Tartu
|
Street address |
Riia 23
|
City |
Tartu |
ZIP/Postal code |
501010 |
Country |
Estonia |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE50192 |
DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns |
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