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Sample GSM1215418 Query DataSets for GSM1215418
Status Public on Feb 26, 2014
Title Gallbladder_KA522
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Gallbladder
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.346172237
cg00000108 0.963856915
cg00000109 0.826507413
cg00000165 0.195526812
cg00000236 0.815137382
cg00000289 0.705430152
cg00000292 0.689605801
cg00000321 0.40736865
cg00000363 0.311540273
cg00000622 0
cg00000658 0.854097482
cg00000714 0.188244595
cg00000721 0.895013914
cg00000734 0.079616232
cg00000769 0.037250859
cg00000807 0.709813513
cg00000884 0.926913431
cg00000905 0.071683357
cg00000924 0.570683942
cg00000948 0.885740948

Total number of rows: 485577

Table truncated, full table size 10528 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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