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Sample GSM1215410 Query DataSets for GSM1215410
Status Public on Feb 26, 2014
Title Coronary_artery_KA522
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Coronary_artery
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.298056111
cg00000108 0.951822839
cg00000109 0.651700416
cg00000165 0.207417569
cg00000236 0.798940206
cg00000289 0.726655851
cg00000292 0.671824497
cg00000321 0.353038426
cg00000363 0.27598306
cg00000622 0.000284981
cg00000658 0.811860169
cg00000714 0.13213455
cg00000721 0.826343986
cg00000734 0.081676605
cg00000769 0.067506297
cg00000807 0.777745234
cg00000884 0.87016384
cg00000905 0.097211316
cg00000924 0.54743539
cg00000948 0.880180354

Total number of rows: 485577

Table truncated, full table size 10768 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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