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Sample GSM1215406 Query DataSets for GSM1215406
Status Public on Feb 26, 2014
Title Splenic_artery_KA522
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Splenic_artery
gender: male
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.414700477
cg00000108 0.973710288
cg00000109 0.540532926
cg00000165 0.199236114
cg00000236 0.765121797
cg00000289 0.76031447
cg00000292 0.640011938
cg00000321 0.409880269
cg00000363 0.244093477
cg00000622 0
cg00000658 0.882610005
cg00000714 0.102845765
cg00000721 0.980874592
cg00000734 0.110111253
cg00000769 0.060206422
cg00000807 0.810891382
cg00000884 0.976056811
cg00000905 0.086615289
cg00000924 0.574144025
cg00000948 0.94006301

Total number of rows: 485577

Table truncated, full table size 10365 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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