GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1215403 Query DataSets for GSM1215403
Status Public on Feb 26, 2014
Title Ischiatic_nerve_BM419/4
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Ischiatic_nerve
gender: female
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.376960745
cg00000108 0.900832399
cg00000109 0.763060942
cg00000165 0.196474369
cg00000236 0.766829756
cg00000289 0.639046374
cg00000292 0.545280414
cg00000321 0.413967666
cg00000363 0.198999165
cg00000622 0.006973501
cg00000658 0.817524135
cg00000714 0.129140798
cg00000721 0.942151393
cg00000734 0.074042456
cg00000769 0.052000904
cg00000807 0.640511649
cg00000884 0.901554385
cg00000905 0.074772639
cg00000924 0.485404601
cg00000948 0.888291907

Total number of rows: 485577

Table truncated, full table size 10740 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap