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Sample GSM1215393 Query DataSets for GSM1215393
Status Public on Feb 26, 2014
Title Coronary_artery_BM419/4
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Coronary_artery
gender: female
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.319041771
cg00000108 0.926656601
cg00000109 0.670705786
cg00000165 0.197340799
cg00000236 0.760629573
cg00000289 0.591730208
cg00000292 0.70924359
cg00000321 0.313209264
cg00000363 0.257440033
cg00000622 0.006325043
cg00000658 0.816433118
cg00000714 0.137247468
cg00000721 0.869571732
cg00000734 0.077828936
cg00000769 0.057182448
cg00000807 0.788068414
cg00000884 0.873823558
cg00000905 0.097891553
cg00000924 0.538248414
cg00000948 0.869799144

Total number of rows: 485577

Table truncated, full table size 10679 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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