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Sample GSM1215390 Query DataSets for GSM1215390
Status Public on Feb 26, 2014
Title Splenic_artery_BM419/4
Sample type genomic
Source name Autopsy
Organism Homo sapiens
Characteristics tissue: Splenic_artery
gender: female
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 25 mg samples of the tissue specimens using the NucleoSpin® Tissue kit (Macherey-Nagel GmbH, Düren, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina protocol
Hybridization protocol According to Illumina protocol
Scan protocol According to Illumina protocol
Data processing The raw data were subject to quality control and normalization using the standard protocols suggested for the bioconductor R package minfi. All probes containing single nucleotide polymorphisms and CpG sites from the X and Y chromosomes were removed from the analysis.
matrix processed value definition: Average Beta
matrix signal intensities value definition: Matrix signal intensities (non-normalized) contains unmethylated (signal A) and methylated (Signal B) signal intensities
Submission date Aug 26, 2013
Last update date Feb 26, 2014
Contact name Kaie Lokk
Organization name University of Tartu
Street address Riia 23
City Tartu
ZIP/Postal code 501010
Country Estonia
Platform ID GPL13534
Series (1)
GSE50192 DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns

Data table header descriptions
VALUE minfi normalized signal intensity

Data table
cg00000029 0.395468813
cg00000108 0.943305006
cg00000109 0.719841383
cg00000165 0.165384261
cg00000236 0.819510667
cg00000289 0.667259468
cg00000292 0.597310691
cg00000321 0.391301092
cg00000363 0.238791555
cg00000622 0.006805007
cg00000658 0.809345604
cg00000714 0.140367257
cg00000721 0.921561792
cg00000734 0.073111357
cg00000769 0.051983435
cg00000807 0.729970486
cg00000884 0.900836899
cg00000905 0.079711392
cg00000924 0.588500364
cg00000948 0.884539992

Total number of rows: 485577

Table truncated, full table size 10804 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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