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Sample GSM12078 Query DataSets for GSM12078
Status Public on Nov 25, 2003
Title N001 Normal Human Kidney U133B
Sample type RNA
 
Source name Trizol isolation of total RNA from normal tissue adjacent to Renal Cell Carcinoma
Organism Homo sapiens
Extracted molecule total RNA
 
Description Age = 58; Gender = Male; Left Kidney; Tumor Type = clear cell; Adjacent Tumor Fuhrman Grade = 1; Adjacent Tumor Capsule Penetration = true; Adjacent Tumor Perinephric Fat Invasion = false; Adjacent Tumor Renal Sinus Invasion = false; Adjacent Tumor Renal Vein Invasion = false; Tumor Location: mid; Scaling Target = 500; Scaling Factor = 22.09; Raw Q = 2.04; Noise = 1.74; Background = 46.76.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2002912
 
Submission date Oct 22, 2003
Last update date May 28, 2005
Contact name Marc E. Lenburg
E-mail(s) mlenburg@bu.edu
Phone 617-414-1375
Fax 617-414-1646
URL http://gg.bu.edu
Organization name Boston University School of Medicine
Department Genetics and Genomics
Street address 715 Albany Street, E613B
City Boston
State/province MA
ZIP/Postal code 02130
Country USA
 
Platform ID GPL97
Series (1)
GSE781 Normal and Renal Cell Carcinoma Kidney Tissue, Human

Data table header descriptions
ID_REF
VALUE MAS 5.0 Statistical Algorithm (mean scaled to 500)
ABS_CALL MAS 5.0 Absent, Marginal, Present call with Alpha1 = 0.05, Alpha2 = 0.065

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 2624 P
AFFX-BioB-M_at 6103.5 P
AFFX-BioB-3_at 3671 P
AFFX-BioC-5_at 6926 P
AFFX-BioC-3_at 6494.1 P
AFFX-BioDn-5_at 7632.2 P
AFFX-BioDn-3_at 34417.4 P
AFFX-CreX-5_at 79090.6 P
AFFX-CreX-3_at 100952.1 P
AFFX-DapX-5_at 15.9 A
AFFX-DapX-M_at 148.5 A
AFFX-DapX-3_at 65.4 A
AFFX-LysX-5_at 38.2 A
AFFX-LysX-M_at 64.9 A
AFFX-LysX-3_at 119.7 A
AFFX-PheX-5_at 9.9 A
AFFX-PheX-M_at 13.7 A
AFFX-PheX-3_at 50.1 A
AFFX-ThrX-5_at 30 A
AFFX-ThrX-M_at 41 A

Total number of rows: 22645

Table truncated, full table size 399 Kbytes.




Supplementary file Size Download File type/resource
GSM12078.CEL.gz 3.1 Mb (ftp)(http) CEL

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