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Sample GSM1201756 Query DataSets for GSM1201756
Status Public on Jan 09, 2015
Title Stretch C
Sample type SRA
Source name Stretched AVIC
Organism Homo sapiens
Characteristics cell type: aortic valve interstitial cells
condition: Stretch
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using RNAeasy columns using the protocol that includes small RNAs
The Illumina TruSeq Small RNA protocol was used. 1 microgram of total RNA was used. After adapter ligation, the small RNAs were gel purified according the manufactuers protocol.
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina HiSeq 2500
Data processing Bowtie2 was used to map the sequence tags to the GRCh37.p10 human genome build
edgeR algorithm in the Bioconducter suite was used to obtain expression levels and statistical significance
Genome_build: GRCh37.p10
Submission date Aug 05, 2013
Last update date May 15, 2019
Contact name Vishal Nigam
Organization name Seattle Childrens Research Institute
Department Pediatrics
Street address 1900 9th Ave
City Seattle
State/province WA
ZIP/Postal code 98101
Country USA
Platform ID GPL16791
Series (1)
GSE49558 Stretch responsive miRNAs in human aortic valve interstitial cells
BioSample SAMN02303006
SRA SRX331697

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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