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Sample GSM12 Query DataSets for GSM12
Status Public on Jan 24, 2001
Title NHGRI_CRL-1634
Sample type RNA
 
Channel 1
Source name fibroblast
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 16 148 34 166 8582390 49229.0 17224.4 171 3423.7 356.5 16 148 34 166 8624460 48422.8 18689.6 157 4488.0 403.8 171 1.017 -0.0074463 99.000 0.427 2.507 1.034 0.211 0.983
2 619 152 637 170 574263 5841.8 2222.8 57 3572.4 321.9 619 152 637 170 597400 5344.8 2044.1 64 4448.6 329.7 69 1.093 0.0240753 99.000 0.427 2.507 1.034 0.211 1.057
3 52 148 70 166 172960 1817.9 622.8 36 3423.3 365.2 52 148 70 166 225113 2269.3 981.8 31 4552.3 410.5 41 0.801 -0.1106983 99.000 0.427 2.507 1.034 0.211 0.775
4 655 152 673 170 479479 4821.1 1346.4 62 3590.8 319.0 655 152 673 170 597757 6029.7 2216.9 61 4457.3 325.2 65 0.800 -0.1118213 99.000 0.427 2.507 1.034 0.211 0.773
5 89 148 107 166 2344805 13453.6 4668.1 139 3415.5 323.9 89 148 107 166 2455847 13121.5 4562.1 134 4546.5 379.8 147 1.025 -0.0034883 99.000 0.427 2.507 1.034 0.211 0.992
6 691 153 709 171 5507132 48849.6 21499.3 101 3599.3 406.5 691 153 709 171 5388676 46882.2 21065.5 113 4438.5 384.5 113 1.042 0.0034613 99.000 0.427 2.507 1.034 0.211 1.008
7 125 147 143 165 1895244 10116.4 3105.2 140 3518.5 342.8 125 147 143 165 2046636 10159.7 3894.0 131 4564.3 364.1 147 0.996 -0.0163743 99.000 0.427 2.507 1.034 0.211 0.963
8 728 153 746 171 5003740 49191.7 20090.6 103 3479.2 325.0 728 153 746 171 4518290 43267.6 20758.2 91 4293.3 289.3 103 1.137 0.0409983 99.000 0.427 2.507 1.034 0.211 1.099
9 162 147 180 165 5436458 30618.8 9804.4 167 3359.1 421.2 162 147 180 165 5838538 32060.8 11829.9 161 4430.0 444.8 168 0.955 -0.0343283 99.000 0.427 2.507 1.034 0.211 0.924
10 764 154 782 172 684336 6750.1 2140.9 73 3618.6 334.1 764 154 782 172 541294 3790.1 1523.2 66 4411.4 326.9 74 1.781 0.2360333 99.000 0.427 2.507 1.034 0.211 1.722
11 198 147 216 165 1791487 18788.2 7328.9 86 3059.2 353.1 198 147 216 165 4103941 45818.1 17834.6 86 4229.9 414.1 90 0.410 -0.4012093 99.000 0.427 2.507 1.034 0.211 0.397
12 800 154 818 172 269061 3113.4 1250.4 43 3613.1 321.9 800 154 818 172 423580 6219.0 2169.4 47 4370.5 312.8 48 0.501 -0.3151553 99.000 0.427 2.507 1.034 0.211 0.484
13 12 762 30 780 1052636 7794.6 3156.4 95 3524.1 331.2 12 762 30 780 1227305 8710.0 4383.5 87 4486.8 346.0 101 0.895 -0.0629843 99.000 0.427 2.507 1.034 0.211 0.865
14 627 757 645 775 6430538 49541.1 17319.1 129 3603.9 335.9 627 757 645 775 5416283 40262.1 19624.7 119 4500.5 330.2 129 1.230 0.0755473 99.000 0.427 2.507 1.034 0.211 1.190
15 48 762 66 780 4944433 39561.5 16204.0 123 3433.5 308.7 48 762 66 780 4439318 34180.8 15376.5 111 4422.0 334.7 123 1.157 0.0488303 99.000 0.427 2.507 1.034 0.211 1.119
16 663 757 681 775 2797458 13958.0 3058.5 166 3636.1 350.6 663 757 681 775 2980812 14208.8 3344.9 155 4538.5 350.4 167 0.982 -0.0222763 99.000 0.427 2.507 1.034 0.211 0.950
17 85 762 103 780 1582032 16079.9 6205.2 86 3451.4 356.7 85 762 103 780 1106322 9230.8 4304.3 82 4427.5 362.3 89 1.742 0.2266003 99.000 0.427 2.507 1.034 0.211 1.685
18 700 757 718 775 2844648 16940.0 5029.4 144 3673.4 349.0 700 757 718 775 2600811 14288.8 4412.1 135 4557.6 351.9 146 1.186 0.0595633 99.000 0.427 2.507 1.034 0.211 1.147
19 121 762 139 780 1315640 10831.3 4726.4 93 3469.2 347.6 121 762 139 780 1433253 11123.8 5164.0 92 4455.1 376.1 100 0.974 -0.0259493 99.000 0.427 2.507 1.034 0.211 0.942
20 736 757 754 775 2832298 20560.5 6891.6 124 3647.2 348.1 736 757 754 775 1946457 12131.9 3736.9 118 4504.5 329.3 125 1.695 0.2145793 99.000 0.427 2.507 1.034 0.211 1.639

Total number of rows: 8192

Table truncated, full table size 1340 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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