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Sample GSM119966 Query DataSets for GSM119966
Status Public on Jul 13, 2006
Title A NUH.BT093
Sample type RNA
Source name Breast Tumor
Organism Homo sapiens
Characteristics NUH-sample ID: NT01-65
grade: Grade2
Probability 1-like (by SWS classifier): 0.876
Probability 3-like (by SWS classifier): 0.124
Genetic grade signature status prediction (by SWS classifier): 2a
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Approximately 10ug of total RNA was processed to produce biotynylated cRNA targets
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 40 tumours
Data processing Affymetrix Microarray Suite Version 5.0
Submission date Jul 12, 2006
Last update date Mar 18, 2013
Contact name Lance David Miller
Phone 65 6478 8100
Fax 65 6478 9060
Organization name Genome Institute of Singapore
Department Microarray and Expression Genomics
Street address 60 Bioplois Street, #02-01 Genome
City Singapore
ZIP/Postal code 138672
Country Singapore
Platform ID GPL96
Series (1)
GSE4922 Genetic Reclassification of Histologic Grade Delineates New Clinical Subtypes of Breast Cancer
Reanalyzed by GSM1100063

Data table header descriptions
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was pressent (P). absent (A), marginal (M) or no call (NC)
P-VALUE the p-value that indicates the significance level of the detection call

Data table
212223_at 7.82818214451063 P 0.00287512549712787
204339_s_at 6.56825746284697 A 0.464506310393464
212356_at 6.90961777888253 A 0.163553459180572
212489_at 8.85390440370386 P 0.00164179881927007
208850_s_at 8.55972194145428 P 0.00164179881927007
208973_at 6.58306186237976 P 0.0129676797672666
210122_at 2.14559419957343 A 0.893841349203427
208174_x_at 7.31772866064765 P 0.0102719017144531
210255_at 5.58120711627444 P 0.0202308511531004
210388_at 4.48890822025635 A 0.836446540819428
207430_s_at 3.33562623145721 A 0.70350996100991
206872_at 5.68489483037426 A 0.429293126207525
207624_s_at 5.54132704531048 P 0.0250027490383783
213315_x_at 7.97485177938577 P 0.00287512549712787
219856_at 2.82652310634357 A 0.836446540819428
213509_x_at 7.77698888928743 A 0.0770218236345017
207818_s_at 1.82416200088202 A 0.857475258508
200656_s_at 8.83699773516989 P 0.00164179881927007
217622_at 6.35666547092643 A 0.123405137319250
204916_at 6.80419502842306 P 0.0306843519290675

Total number of rows: 22283

Table truncated, full table size 1057 Kbytes.

Supplementary file Size Download File type/resource
GSM119966.CEL.gz 3.4 Mb (ftp)(http) CEL

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