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Sample GSM1198448 Query DataSets for GSM1198448
Status Public on Sep 02, 2014
Title MDT-MB-1234
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 47
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1234.DetectionPval
cg00050873 0.175583837884592 null
cg00212031 0.0197901049475262 null
cg00213748 0.965049928673324 null
cg00214611 0.0404154436667419 null
cg00455876 0.804328223624887 null
cg01707559 0.0504838521627609 null
cg02004872 0.00928346101847679 null
cg02011394 0.992423398328691 null
cg02050847 0.991437023197883 null
cg02233190 0.0229779411764706 null
cg02494853 0.0148860364097809 null
cg02839557 0.00614782730194215 null
cg02842889 0.0153089119737562 null
cg03052502 0.926336605692492 null
cg03155755 0.968101925044174 null
cg03244189 0.065075086638429 null
cg03443143 0.1759549154665 null
cg03683899 0.0052013422818792 null
cg03695421 0.441020702936928 null
cg03706273 0.0164687859057832 null

Total number of rows: 485512

Table truncated, full table size 16178 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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