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Sample GSM1198445 Query DataSets for GSM1198445
Status Public on Sep 02, 2014
Title MDT-MB-452
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 46
gender: M
histology: medulloblastoma, NOS
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-452.DetectionPval
cg00050873 0.357969678344602 null
cg00212031 0.00838753851420746 null
cg00213748 1 null
cg00214611 0.0219092331768388 null
cg00455876 0.85130503559188 null
cg01707559 0.057402565060391 null
cg02004872 0 null
cg02011394 0.990993434973686 null
cg02050847 0.989823245848956 null
cg02233190 0.0124391563007031 null
cg02494853 0.0138922270826323 null
cg02839557 0.0132183908045977 null
cg02842889 0.0233887043189369 null
cg03052502 0.811627191633344 null
cg03155755 0.974662162162162 null
cg03244189 0.0429694031098478 null
cg03443143 0.409711604365477 null
cg03683899 0.00930232558139535 null
cg03695421 0.293040768631524 null
cg03706273 0.00835378269722759 null

Total number of rows: 485512

Table truncated, full table size 16104 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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