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Sample GSM1198442 Query DataSets for GSM1198442
Status Public on Sep 02, 2014
Title MDT-MB-1326
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 39
gender: F
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1326.DetectionPval
cg00050873 0.566666666666667 null
cg00212031 0.325301204819277 null
cg00213748 null null
cg00214611 1 null
cg00455876 0.167664670658683 null
cg01707559 0.272554965883245 null
cg02004872 0.142454160789845 null
cg02011394 0.614035087719298 null
cg02050847 0.276315789473684 null
cg02233190 0.121311475409836 null
cg02494853 0.0163143708327422 null
cg02839557 0 null
cg02842889 1 null
cg03052502 1 null
cg03155755 0 null
cg03244189 0.0820895522388059 null
cg03443143 0.201030927835051 null
cg03683899 0 null
cg03695421 0.152173913043478 null
cg03706273 0.0039638174611241 null

Total number of rows: 485512

Table truncated, full table size 16184 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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