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Sample GSM1198440 Query DataSets for GSM1198440
Status Public on Sep 02, 2014
Title MDT-MB-107
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 39
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-107.DetectionPval
cg00050873 0.320412595005429 null
cg00212031 0.00800640512409928 null
cg00213748 0.920278637770898 null
cg00214611 0.0115914030427433 null
cg00455876 0.853238487457881 null
cg01707559 0.0370713623725672 null
cg02004872 0.0045647212259537 null
cg02011394 0.997091880845712 null
cg02050847 0.938715652979315 null
cg02233190 0.00782831691186395 null
cg02494853 0.0139188218390805 null
cg02839557 0.0100678035750976 null
cg02842889 0.00661194710442317 null
cg03052502 0.99238578680203 null
cg03155755 0.961740793878527 null
cg03244189 0.0478288231592196 null
cg03443143 0.450016469038208 null
cg03683899 0.00676223965377333 null
cg03695421 0.126555209953344 null
cg03706273 0.00812681850105348 null

Total number of rows: 485512

Table truncated, full table size 16170 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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