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Sample GSM1198439 Query DataSets for GSM1198439
Status Public on Sep 02, 2014
Title MDT-MB-1330
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 37
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1330.DetectionPval
cg00050873 0.482306030902143 null
cg00212031 0.00924043614858621 null
cg00213748 0.930921052631579 null
cg00214611 0.0211388306989145 null
cg00455876 0.839567747298421 null
cg01707559 0.0891589459752136 null
cg02004872 0.00516367887763055 null
cg02011394 0.995844097495226 null
cg02050847 0.680029202893741 null
cg02233190 0.0151743721714438 null
cg02494853 0.0173840566767875 null
cg02839557 0.00180614087898856 null
cg02842889 0.00711413547788432 null
cg03052502 0.987606363300037 null
cg03155755 0.97074518772632 null
cg03244189 0.035495261103884 null
cg03443143 0.556013784531947 null
cg03683899 0.0089191232048375 null
cg03695421 0.818690095846645 null
cg03706273 0.0195121951219512 null

Total number of rows: 485512

Table truncated, full table size 16198 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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