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Sample GSM1198438 Query DataSets for GSM1198438
Status Public on Sep 02, 2014
Title MDT-MB-1200
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 34
gender: F
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1200.DetectionPval
cg00050873 0.385 null
cg00212031 0.738095238095238 null
cg00213748 0.596774193548387 null
cg00214611 0.891385767790262 null
cg00455876 0.309037900874636 null
cg01707559 0.253534401508011 null
cg02004872 0.123535676251331 null
cg02011394 0.386454183266932 null
cg02050847 0.208333333333333 null
cg02233190 0.204472843450479 null
cg02494853 0.0097399003873824 null
cg02839557 0.0679012345679012 null
cg02842889 0.517857142857143 null
cg03052502 1 null
cg03155755 0.522012578616352 null
cg03244189 0.297872340425532 null
cg03443143 0.654970760233918 null
cg03683899 1 null
cg03695421 0.131034482758621 null
cg03706273 0.0161190328580285 null

Total number of rows: 485512

Table truncated, full table size 16195 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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