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Sample GSM1198437 Query DataSets for GSM1198437
Status Public on Sep 02, 2014
Title MDT-MB-516
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 33
gender: M
histology: medulloblastoma, NOS
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-516.DetectionPval
cg00050873 0.314938551485503 null
cg00212031 0 null
cg00213748 0.9688995215311 null
cg00214611 0.00980036297640654 null
cg00455876 0.819476226798881 null
cg01707559 0.0911645332500781 null
cg02004872 0.00242631200575126 null
cg02011394 0.994511687166168 null
cg02050847 0.989263013227968 null
cg02233190 0.0114908949264777 null
cg02494853 0.00789224952741021 null
cg02839557 0.0239390642002176 null
cg02842889 0.0102470265324794 null
cg03052502 0.968179522332059 null
cg03155755 0.971698113207547 null
cg03244189 0.0572063877097231 null
cg03443143 0.292555113841706 null
cg03683899 0.00729318608043342 null
cg03695421 0.828190743338008 null
cg03706273 0.0145051194539249 null

Total number of rows: 485512

Table truncated, full table size 16142 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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