GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1198434 Query DataSets for GSM1198434
Status Public on Sep 02, 2014
Title MDT-MB-194
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 27
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-194.DetectionPval
cg00050873 0.295766177531874 null
cg00212031 0.0163547156096675 null
cg00213748 0.97071129707113 null
cg00214611 0.0144749754661433 null
cg00455876 0.770570064588599 null
cg01707559 0.0965022647206844 null
cg02004872 0.0141587735572698 null
cg02011394 0.997189722413398 null
cg02050847 0.979593631805788 null
cg02233190 0.00763096973334476 null
cg02494853 0.0105992451269324 null
cg02839557 0.00873675164709252 null
cg02842889 0.0124605915027774 null
cg03052502 0.934129183542954 null
cg03155755 0.968809675366009 null
cg03244189 0.0519768991559307 null
cg03443143 0.323495738455667 null
cg03683899 0.00551142810828335 null
cg03695421 0.0641496825927163 null
cg03706273 0.00509823427008207 null

Total number of rows: 485512

Table truncated, full table size 16163 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap