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Sample GSM1198433 Query DataSets for GSM1198433
Status Public on Sep 02, 2014
Title MDT-MB-1329
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 26
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1329.DetectionPval
cg00050873 0.23479587943533 null
cg00212031 0.0215415684954561 null
cg00213748 1 null
cg00214611 0.0153291253381425 null
cg00455876 0.896541950113379 null
cg01707559 0.020481447000931 null
cg02004872 0.0064012627148369 null
cg02011394 1 null
cg02050847 0.960032267527134 null
cg02233190 0.00441333130421549 null
cg02494853 0.00458519940285775 null
cg02839557 0 null
cg02842889 0.00767500330819108 null
cg03052502 0.769852807559513 null
cg03155755 0.995196266813066 null
cg03244189 0.0170924117205109 null
cg03443143 0.295705443175292 null
cg03683899 0.003671649619722 null
cg03695421 0.891074918566775 null
cg03706273 0.00573526038082129 null

Total number of rows: 485512

Table truncated, full table size 15989 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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