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Sample GSM1198432 Query DataSets for GSM1198432
Status Public on Sep 02, 2014
Title MDT-MB-1250
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 26
gender: F
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1250.DetectionPval
cg00050873 0.775665399239544 null
cg00212031 0 null
cg00213748 1 null
cg00214611 0.6 null
cg00455876 0.193633952254642 null
cg01707559 0.372997711670481 null
cg02004872 0.143518518518519 null
cg02011394 0.95 null
cg02050847 0 null
cg02233190 0.127058823529412 null
cg02494853 0.00989144770214061 null
cg02839557 0.382352941176471 null
cg02842889 0.383720930232558 null
cg03052502 null null
cg03155755 0.717647058823529 null
cg03244189 0.299075025693731 null
cg03443143 0.463709677419355 null
cg03683899 0.539130434782609 null
cg03695421 0.293948126801153 null
cg03706273 0.00783116538359437 null

Total number of rows: 485512

Table truncated, full table size 16167 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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