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Sample GSM1198431 Query DataSets for GSM1198431
Status Public on Sep 02, 2014
Title MDT-MB-1204
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 25
gender: M
histology: LCA
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1204.DetectionPval
cg00050873 0.537253430531732 null
cg00212031 0.00907258064516129 null
cg00213748 1 null
cg00214611 0.00757855822550832 null
cg00455876 0.88249575139597 null
cg01707559 0.0491369390103567 null
cg02004872 0.01258020938872 null
cg02011394 0.991596638655462 null
cg02050847 0.978579567033802 null
cg02233190 0.0433482810164424 null
cg02494853 0.00761021299590219 null
cg02839557 0.0306839186691312 null
cg02842889 0.0111256544502618 null
cg03052502 0.976569990412272 null
cg03155755 0.960803432137285 null
cg03244189 0.0353861857774753 null
cg03443143 0.594384611262927 null
cg03683899 0.0161182001343183 null
cg03695421 0.833557769997307 null
cg03706273 0.0156710713115649 null

Total number of rows: 485512

Table truncated, full table size 16148 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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