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Sample GSM1198429 Query DataSets for GSM1198429
Status Public on Sep 02, 2014
Title MDT-MB-1325
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 23
gender: F
histology: NA
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1325.DetectionPval
cg00050873 0.501639344262295 null
cg00212031 0.288732394366197 null
cg00213748 0.503378378378378 null
cg00214611 0.58252427184466 null
cg00455876 0.0142857142857143 null
cg01707559 0.449063499314756 null
cg02004872 0.233142857142857 null
cg02011394 0.786163522012579 null
cg02050847 0.696428571428571 null
cg02233190 0.204255319148936 null
cg02494853 0.0142842083069787 null
cg02839557 0.237373737373737 null
cg02842889 0.485507246376812 null
cg03052502 1 null
cg03155755 0.674897119341564 null
cg03244189 0.23915592028136 null
cg03443143 0.39051094890511 null
cg03683899 0.925 null
cg03695421 0.0857787810383747 null
cg03706273 0.00585683297180044 null

Total number of rows: 485512

Table truncated, full table size 16190 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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