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Sample GSM1198428 Query DataSets for GSM1198428
Status Public on Sep 02, 2014
Title MDT-MB-201
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 23
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-201.DetectionPval
cg00050873 0.644363582355562 null
cg00212031 0.00321996377540753 null
cg00213748 0.85459940652819 null
cg00214611 0.00241779497098646 null
cg00455876 0.802550091074681 null
cg01707559 0.031629392971246 null
cg02004872 0.0188183807439825 null
cg02011394 0.992723121923379 null
cg02050847 0.972170278297217 null
cg02233190 0.0234425473004153 null
cg02494853 0.0108416547788873 null
cg02839557 0.00126582278481013 null
cg02842889 0.00459996714309183 null
cg03052502 0.991715758468336 null
cg03155755 0.966622162883845 null
cg03244189 0.0355362946912243 null
cg03443143 0.683215759350459 null
cg03683899 0 null
cg03695421 0.442178077332387 null
cg03706273 0.0108440611326019 null

Total number of rows: 485512

Table truncated, full table size 16069 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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