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Sample GSM1198426 Query DataSets for GSM1198426
Status Public on Sep 02, 2014
Title MDT-MB-110
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 20
gender: F
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-110.DetectionPval
cg00050873 1 null
cg00212031 0.0188679245283018 null
cg00213748 0.885714285714286 null
cg00214611 0.115942028985507 null
cg00455876 0.198275862068965 null
cg01707559 0.457731958762887 null
cg02004872 0.254473161033797 null
cg02011394 0 null
cg02050847 0.230769230769231 null
cg02233190 0.0788643533123028 null
cg02494853 0.0117779024116657 null
cg02839557 0 null
cg02842889 0.407894736842105 null
cg03052502 null null
cg03155755 0.444444444444444 null
cg03244189 0.578378378378378 null
cg03443143 0.208791208791209 null
cg03683899 0.196969696969697 null
cg03695421 0.385507246376812 null
cg03706273 0.0147922998986829 null

Total number of rows: 485512

Table truncated, full table size 16193 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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