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Sample GSM1198424 Query DataSets for GSM1198424
Status Public on Sep 02, 2014
Title MDT-MB-1218
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 17
gender: F
histology: LCA
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1218.DetectionPval
cg00050873 0.455645161290323 null
cg00212031 0.384615384615384 null
cg00213748 0.96551724137931 null
cg00214611 1 null
cg00455876 0 null
cg01707559 0.378 null
cg02004872 0.528894472361809 null
cg02011394 0.345971563981043 null
cg02050847 0 null
cg02233190 0.301630434782609 null
cg02494853 0.0171575502571295 null
cg02839557 0 null
cg02842889 0.990291262135922 null
cg03052502 0.577319587628866 null
cg03155755 0.933333333333333 null
cg03244189 0.20303605313093 null
cg03443143 0 null
cg03683899 0.3 null
cg03695421 0.678571428571429 null
cg03706273 0.0160302457466919 null

Total number of rows: 485512

Table truncated, full table size 16127 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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