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Sample GSM1198423 Query DataSets for GSM1198423
Status Public on Sep 02, 2014
Title MDT-MB-138
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 3
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-138.DetectionPval
cg00050873 0.776498256426892 null
cg00212031 0.00241896468311562 null
cg00213748 0.89792663476874 null
cg00214611 0 null
cg00455876 0.782527881040892 null
cg01707559 0.0338339375107889 null
cg02004872 0.000935550935550935 null
cg02011394 0.987605102928385 null
cg02050847 0.996823379923761 null
cg02233190 0.0301470588235294 null
cg02494853 0.0219047118768714 null
cg02839557 0.000753153831670117 null
cg02842889 0 null
cg03052502 0.99691538140892 null
cg03155755 0.979956108266277 null
cg03244189 0.0180521506574549 null
cg03443143 0.93736556826981 null
cg03683899 0 null
cg03695421 0.795763060468943 null
cg03706273 0.228647632902952 null

Total number of rows: 485512

Table truncated, full table size 16069 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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