GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1198422 Query DataSets for GSM1198422
Status Public on Sep 02, 2014
Title MDT-MB-1187
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 2.6
gender: F
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1187.DetectionPval
cg00050873 0.203252032520325 null
cg00212031 0 null
cg00213748 0.678714859437751 null
cg00214611 0.864583333333333 null
cg00455876 0.0870870870870871 null
cg01707559 0.2 null
cg02004872 0.152459016393443 null
cg02011394 0.91304347826087 null
cg02050847 1 null
cg02233190 0.0966666666666667 null
cg02494853 0.0128879892037787 null
cg02839557 0.0317460317460315 null
cg02842889 0.875 null
cg03052502 0.96969696969697 null
cg03155755 0.437939110070258 null
cg03244189 0.258160237388724 null
cg03443143 0.878787878787879 null
cg03683899 0 null
cg03695421 0.174033149171271 null
cg03706273 0.00252942893277556 null

Total number of rows: 485512

Table truncated, full table size 16144 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap