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Sample GSM1198420 Query DataSets for GSM1198420
Status Public on Sep 02, 2014
Title MDT-MB-53
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 2
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-53.DetectionPval
cg00050873 0.666194634568484 null
cg00212031 0.0142475512021371 null
cg00213748 0.952780692549843 null
cg00214611 0.00782828282828283 null
cg00455876 0.892722710163112 null
cg01707559 0.0453068900666781 null
cg02004872 0.00793330644076913 null
cg02011394 0.992803086511352 null
cg02050847 0.991270527225583 null
cg02233190 0.0132301547678482 null
cg02494853 0.00819283634640125 null
cg02839557 0.0215628773503536 null
cg02842889 0.00109150445697653 null
cg03052502 0.992839881858051 null
cg03155755 0.967524592372996 null
cg03244189 0.0337986774430566 null
cg03443143 0.706469680980599 null
cg03683899 0.0121875645527784 null
cg03695421 0.616999747027574 null
cg03706273 0.0118008024545669 null

Total number of rows: 485512

Table truncated, full table size 16178 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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