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Sample GSM1198419 Query DataSets for GSM1198419
Status Public on Sep 02, 2014
Title MDT-MB-446
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1.7
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-446.DetectionPval
cg00050873 0.210526315789474 null
cg00212031 0.559055118110236 null
cg00213748 null null
cg00214611 1 null
cg00455876 0.124309392265193 null
cg01707559 0.293189368770764 null
cg02004872 0.119086460032626 null
cg02011394 1 null
cg02050847 0.627450980392157 null
cg02233190 0.213725490196078 null
cg02494853 0.0106393129770992 null
cg02839557 1 null
cg02842889 0.533898305084746 null
cg03052502 1 null
cg03155755 0.483370288248337 null
cg03244189 0.204980842911877 null
cg03443143 0.507246376811594 null
cg03683899 0.197452229299363 null
cg03695421 0.119140625 null
cg03706273 0.0116594189197706 null

Total number of rows: 485512

Table truncated, full table size 16182 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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