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Sample GSM1198418 Query DataSets for GSM1198418
Status Public on Sep 02, 2014
Title MDT-MB-704
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1.6
gender: M
histology: medulloblastoma, NOS
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-704.DetectionPval
cg00050873 0.72005076142132 null
cg00212031 0.0286013776579814 null
cg00213748 0.230149597238205 null
cg00214611 0.0184508937151643 null
cg00455876 0.778916870960553 null
cg01707559 0.0409641563631822 null
cg02004872 0.00759381898454746 null
cg02011394 0.925062222703171 null
cg02050847 0.672468137590791 null
cg02233190 0.0125442264393696 null
cg02494853 0.00783500985694788 null
cg02839557 0.011517893870835 null
cg02842889 0.00544143653924636 null
cg03052502 0.98855923986814 null
cg03155755 0.867046431642304 null
cg03244189 0.0443686006825939 null
cg03443143 0.870782575419351 null
cg03683899 0.0125786163522013 null
cg03695421 0.733899012380025 null
cg03706273 0.00799482687672682 null

Total number of rows: 485512

Table truncated, full table size 16176 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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