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Sample GSM1198417 Query DataSets for GSM1198417
Status Public on Sep 02, 2014
Title MDT-MB-1263
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1263.DetectionPval
cg00050873 0.844626382354738 null
cg00212031 0.0073466598325645 null
cg00213748 0.932419196865818 null
cg00214611 0.0348509266720387 null
cg00455876 0.784276387377584 null
cg01707559 0.066949552098067 null
cg02004872 0.00414250207125104 null
cg02011394 0.991397128652031 null
cg02050847 0.98426014010205 null
cg02233190 0.0112741440769295 null
cg02494853 0.00382195292472617 null
cg02839557 0 null
cg02842889 0.0121402264356841 null
cg03052502 0.994238233867055 null
cg03155755 0.956030961083638 null
cg03244189 0.0326143226919758 null
cg03443143 0.8736484399135 null
cg03683899 0 null
cg03695421 0.762016251205068 null
cg03706273 0.00811156175343075 null

Total number of rows: 485512

Table truncated, full table size 16122 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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