GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1198416 Query DataSets for GSM1198416
Status Public on Sep 02, 2014
Title MDT-MB-1246
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: F
histology: MBEN
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1246.DetectionPval
cg00050873 1 null
cg00212031 0.535714285714286 null
cg00213748 0.805907172995781 null
cg00214611 1 null
cg00455876 0.375 null
cg01707559 0.284810126582278 null
cg02004872 0.199318568994889 null
cg02011394 1 null
cg02050847 0.340136054421769 null
cg02233190 0.177545691906005 null
cg02494853 0.0171284634760705 null
cg02839557 0.191176470588235 null
cg02842889 0.337837837837838 null
cg03052502 null null
cg03155755 0.390334572490706 null
cg03244189 0.240126382306477 null
cg03443143 0.31404958677686 null
cg03683899 0 null
cg03695421 0.0883977900552486 null
cg03706273 0.00676625659050967 null

Total number of rows: 485512

Table truncated, full table size 16183 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap