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Sample GSM1198415 Query DataSets for GSM1198415
Status Public on Sep 02, 2014
Title MDT-MB-1243
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1243.DetectionPval
cg00050873 0.63963591228796 null
cg00212031 0.00630417651694248 null
cg00213748 1 null
cg00214611 0.0111047290829025 null
cg00455876 0.832669322709163 null
cg01707559 0.0331682598180352 null
cg02004872 0.00588458618071374 null
cg02011394 0.977021731385821 null
cg02050847 0.171183717193358 null
cg02233190 0.00770047796070101 null
cg02494853 0.00776211403458707 null
cg02839557 0.00338345864661654 null
cg02842889 0.0130755320628738 null
cg03052502 0.992453357557124 null
cg03155755 0.9517042300433 null
cg03244189 0.02745018300122 null
cg03443143 0.72116392330929 null
cg03683899 0.00158159597411934 null
cg03695421 0.229549854791868 null
cg03706273 0.00730193501277839 null

Total number of rows: 485512

Table truncated, full table size 16169 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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