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Sample GSM1198414 Query DataSets for GSM1198414
Status Public on Sep 02, 2014
Title MDT-MB-1215
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1215.DetectionPval
cg00050873 0.674854513465963 null
cg00212031 0.00729318608043342 null
cg00213748 0.733800350262697 null
cg00214611 0 null
cg00455876 0.639589686720266 null
cg01707559 0.0214007782101167 null
cg02004872 0.010194404931247 null
cg02011394 0.983523914914546 null
cg02050847 0.982337329550654 null
cg02233190 0.0191202591160798 null
cg02494853 0.0105864916366716 null
cg02839557 0.0021869874248223 null
cg02842889 0.0157145498243668 null
cg03052502 0.990829000577701 null
cg03155755 0.948982957669049 null
cg03244189 0.0371346430282703 null
cg03443143 0.761024751484422 null
cg03683899 0 null
cg03695421 0.851907820173782 null
cg03706273 0.00908628334665988 null

Total number of rows: 485512

Table truncated, full table size 16170 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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