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Sample GSM1198413 Query DataSets for GSM1198413
Status Public on Sep 02, 2014
Title MDT-MB-1211
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1211.DetectionPval
cg00050873 0.90174935907103 null
cg00212031 0.0217630248406243 null
cg00213748 0.996138996138996 null
cg00214611 0 null
cg00455876 0.307501036054704 null
cg01707559 0.0510720667063728 null
cg02004872 0.00947867298578199 null
cg02011394 0.991841123268611 null
cg02050847 0.994788582257491 null
cg02233190 0.0185205971489505 null
cg02494853 0.0164482664482664 null
cg02839557 0.0169902912621359 null
cg02842889 0.0290758047767394 null
cg03052502 0.996207513416816 null
cg03155755 0.96188980873537 null
cg03244189 0.0292397660818713 null
cg03443143 0.938217764209914 null
cg03683899 0.0215252152521525 null
cg03695421 0.856593214410633 null
cg03706273 0.0258986574274578 null

Total number of rows: 485512

Table truncated, full table size 16133 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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