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Sample GSM1198412 Query DataSets for GSM1198412
Status Public on Sep 02, 2014
Title MDT-MB-1174
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: F
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1174.DetectionPval
cg00050873 0.631853785900783 null
cg00212031 0 null
cg00213748 1 null
cg00214611 0.251798561151079 null
cg00455876 0.127340823970037 null
cg01707559 0.323204419889503 null
cg02004872 0.156146179401993 null
cg02011394 0.942271880819367 null
cg02050847 0.53448275862069 null
cg02233190 0.201388888888889 null
cg02494853 0.0106867744385375 null
cg02839557 0.524271844660194 null
cg02842889 0.885057471264368 null
cg03052502 null null
cg03155755 0.516717325227964 null
cg03244189 0.356164383561644 null
cg03443143 1 null
cg03683899 0.743589743589744 null
cg03695421 0.304526748971193 null
cg03706273 0.00751937984496124 null

Total number of rows: 485512

Table truncated, full table size 16176 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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