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Sample GSM1198411 Query DataSets for GSM1198411
Status Public on Sep 02, 2014
Title MDT-MB-709
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: NA
histology: medulloblastoma, NOS
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-709.DetectionPval
cg00050873 0.653837837837838 null
cg00212031 0.00111141983884412 null
cg00213748 0.876769795490299 null
cg00214611 0.0113735783027122 null
cg00455876 0.755731225296443 null
cg01707559 0.0398308418568057 null
cg02004872 0.00689411348771434 null
cg02011394 0.969052531344231 null
cg02050847 0.984129174717085 null
cg02233190 0.00885458976441917 null
cg02494853 0.00889251848827186 null
cg02839557 0.00727081138040042 null
cg02842889 0.0191661062542031 null
cg03052502 0.930644965383214 null
cg03155755 0.938282489860695 null
cg03244189 0.0412633723892002 null
cg03443143 0.762186718391098 null
cg03683899 0.0136319376825706 null
cg03695421 0.599750104123282 null
cg03706273 0.00606947379829838 null

Total number of rows: 485512

Table truncated, full table size 16215 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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