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Sample GSM1198409 Query DataSets for GSM1198409
Status Public on Sep 02, 2014
Title MDT-MB-595
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: MBEN
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-595.DetectionPval
cg00050873 0.741303690260133 null
cg00212031 0.000847457627118647 null
cg00213748 0.477031802120141 null
cg00214611 0.0224784988272088 null
cg00455876 0.871432608081379 null
cg01707559 0.02614590058102 null
cg02004872 0.00148038490007402 null
cg02011394 0.990925231801144 null
cg02050847 0.991036576550528 null
cg02233190 0.00532207744540283 null
cg02494853 0.0119360490582567 null
cg02839557 0.0142596584314376 null
cg02842889 0.0031972097078913 null
cg03052502 0.997638455092557 null
cg03155755 0.978077971323617 null
cg03244189 0.0337947882736156 null
cg03443143 0.791868548556983 null
cg03683899 0 null
cg03695421 0.85041067761807 null
cg03706273 0.00306422362578951 null

Total number of rows: 485512

Table truncated, full table size 16147 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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