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Sample GSM1198408 Query DataSets for GSM1198408
Status Public on Sep 02, 2014
Title MDT-MB-429
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: Classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-429.DetectionPval
cg00050873 0.790338328310056 null
cg00212031 0.00124785524879114 null
cg00213748 0.116474291710388 null
cg00214611 0.0181531176006314 null
cg00455876 0.734610377533941 null
cg01707559 0.0710286529805687 null
cg02004872 0.00645273805371469 null
cg02011394 0.979701552529769 null
cg02050847 0.970965705869977 null
cg02233190 0.0136843790012804 null
cg02494853 0.0167887323943662 null
cg02839557 0.00132855055134848 null
cg02842889 0.00857376156777354 null
cg03052502 0.994971342056883 null
cg03155755 0.947780020181635 null
cg03244189 0.0433199156603412 null
cg03443143 0.81113418372392 null
cg03683899 0.0164226084576434 null
cg03695421 0.801032110091743 null
cg03706273 0.010717383223888 null

Total number of rows: 485512

Table truncated, full table size 16212 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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