GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1198407 Query DataSets for GSM1198407
Status Public on Sep 02, 2014
Title MDT-MB-226
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-226.DetectionPval
cg00050873 0.696701528559936 null
cg00212031 0.0152464494569758 null
cg00213748 0.9545159194282 null
cg00214611 0.00291849072336877 null
cg00455876 0.810080816673756 null
cg01707559 0.0180652680652681 null
cg02004872 0.00967286164547332 null
cg02011394 0.975091904869082 null
cg02050847 0.952641719906703 null
cg02233190 0.00810737771371948 null
cg02494853 0.013883836546623 null
cg02839557 0 null
cg02842889 0.0181761203384519 null
cg03052502 0.993889479277364 null
cg03155755 0.959758551307847 null
cg03244189 0.0746235606731621 null
cg03443143 0.756923528979652 null
cg03683899 0.013300340241262 null
cg03695421 0.879847508873406 null
cg03706273 0.0139092751799818 null

Total number of rows: 485512

Table truncated, full table size 16188 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap