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Sample GSM1198406 Query DataSets for GSM1198406
Status Public on Sep 02, 2014
Title MDT-MB-225
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-225.DetectionPval
cg00050873 0.740343347639485 null
cg00212031 0.019449715370019 null
cg00213748 0.908108108108108 null
cg00214611 0.0303151977514555 null
cg00455876 0.869883934025657 null
cg01707559 0.0481430536451169 null
cg02004872 0.00286286859433152 null
cg02011394 0.994250513347023 null
cg02050847 0.976412402510938 null
cg02233190 0.0091324200913242 null
cg02494853 0.0102874653436451 null
cg02839557 0.00820232399179768 null
cg02842889 0.0166666666666667 null
cg03052502 0.99396613832853 null
cg03155755 0.955435620663069 null
cg03244189 0.0525851938895417 null
cg03443143 0.760313672008183 null
cg03683899 0.00539257981018119 null
cg03695421 0.377463482494783 null
cg03706273 0.00695150898609698 null

Total number of rows: 485512

Table truncated, full table size 16208 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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