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Sample GSM1198405 Query DataSets for GSM1198405
Status Public on Sep 02, 2014
Title MDT-MB-158
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: F
histology: MBEN
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-158.DetectionPval
cg00050873 1 null
cg00212031 null null
cg00213748 1 null
cg00214611 0 null
cg00455876 0 null
cg01707559 0.106060606060606 null
cg02004872 0 null
cg02011394 0.565217391304348 null
cg02050847 0 null
cg02233190 0.0841750841750842 null
cg02494853 0.00827393075356415 null
cg02839557 0 null
cg02842889 0.444444444444444 null
cg03052502 0.529411764705882 null
cg03155755 0 null
cg03244189 0.425287356321839 null
cg03443143 null null
cg03683899 0.619047619047619 null
cg03695421 0.0664451827242525 null
cg03706273 0.00869735170526727 null

Total number of rows: 485512

Table truncated, full table size 16032 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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