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Sample GSM1198404 Query DataSets for GSM1198404
Status Public on Sep 02, 2014
Title MDT-MB-13
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 1
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-13.DetectionPval
cg00050873 0.604074074074074 null
cg00212031 0 null
cg00213748 0.979038224414303 null
cg00214611 0.0073343449671219 null
cg00455876 0.848749623380536 null
cg01707559 0.0177179305457123 null
cg02004872 0.00745135918311025 null
cg02011394 0.988320846187748 null
cg02050847 0.992188871335791 null
cg02233190 0.0100804168082456 null
cg02494853 0.00371694067190851 null
cg02839557 0.00742524583584186 null
cg02842889 0.00921658986175115 null
cg03052502 1 null
cg03155755 0.945889531149647 null
cg03244189 0.0413105413105413 null
cg03443143 0.693355910337042 null
cg03683899 0.0201834862385321 null
cg03695421 0.795842956120092 null
cg03706273 0.00682781353005807 null

Total number of rows: 485512

Table truncated, full table size 16153 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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