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Sample GSM1198403 Query DataSets for GSM1198403
Status Public on Sep 02, 2014
Title MDT-MB-1247
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 0.8
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1247.DetectionPval
cg00050873 0.649395946014255 null
cg00212031 0.017418309478801 null
cg00213748 0.951916829109812 null
cg00214611 0.0142186833499218 null
cg00455876 0.757937455239914 null
cg01707559 0.0356581017304667 null
cg02004872 0.0151622279833451 null
cg02011394 0.982454453684565 null
cg02050847 0.97996383363472 null
cg02233190 0.0140382317801673 null
cg02494853 0.0177247968568622 null
cg02839557 0.0164677276746242 null
cg02842889 0.0205399682371625 null
cg03052502 0.997623127521972 null
cg03155755 0.962214935161723 null
cg03244189 0.0380585516178737 null
cg03443143 0.757243152378127 null
cg03683899 0.005090236001851 null
cg03695421 0.565918521312712 null
cg03706273 0.0125091263081042 null

Total number of rows: 485512

Table truncated, full table size 16200 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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