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Sample GSM1198402 Query DataSets for GSM1198402
Status Public on Sep 02, 2014
Title MDT-MB-1333
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 0.5
gender: M
histology: desmoplastic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-1333.DetectionPval
cg00050873 0.721052631578947 null
cg00212031 0.0138588912886969 null
cg00213748 0.619335347432024 null
cg00214611 0.0247116968698517 null
cg00455876 0.775205538727823 null
cg01707559 0.0464891041162228 null
cg02004872 0.011963734928498 null
cg02011394 0.992884222805483 null
cg02050847 0.85480572597137 null
cg02233190 0.00507783234828935 null
cg02494853 0.0135198135198135 null
cg02839557 0.0172413793103448 null
cg02842889 0.0124090714591356 null
cg03052502 0.977855960264901 null
cg03155755 0.959242822208133 null
cg03244189 0.0279761904761905 null
cg03443143 0.770631407922012 null
cg03683899 0.00571276737079846 null
cg03695421 0.820764053840063 null
cg03706273 0.0117966187231895 null

Total number of rows: 485512

Table truncated, full table size 16205 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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