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Sample GSM1198401 Query DataSets for GSM1198401
Status Public on Sep 02, 2014
Title MDT-MB-10
Sample type genomic
Source name Primary medulloblastoma tumor tissue
Organism Homo sapiens
Characteristics age: 0.5
gender: M
histology: classic
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Allprep DNA/RNA/Protein Mini Kit.
Label biotin/DNP
Label protocol Illumina
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Description Methylation data from a glioblastoma tumor sample
Data processing Data analysis has been carried out using the minfi Bioconductor package (version 1.4.0), performing background correction and normalization to internal controls.
Submission date Jul 30, 2013
Last update date Sep 02, 2014
Contact name Marc Remke
Organization name The Hospital for Sick Children
Department Laboratory Medicine and Pathobiology
Street address 555 University Ave. Rm 1504
City Toronto
ZIP/Postal code M5G 1X8
Country Canada
Platform ID GPL13534
Series (1)
GSE49377 Methylation profiling data from medulloblastoma tumor samples

Data table header descriptions
VALUE Normalized Average Beta

Data table
ID_REF VALUE MDT-MB-10.DetectionPval
cg00050873 0.741530490235153 null
cg00212031 0 null
cg00213748 0.952904238618524 null
cg00214611 0.0254219183935057 null
cg00455876 0.848931841302136 null
cg01707559 0.0449687716863289 null
cg02004872 0.00364228889101888 null
cg02011394 0.993396918561996 null
cg02050847 0.980259141170884 null
cg02233190 0.00595550884568226 null
cg02494853 0.00946021146355036 null
cg02839557 0.00463554987212276 null
cg02842889 0.0157766990291262 null
cg03052502 1 null
cg03155755 0.982880755608028 null
cg03244189 0.0504831394202327 null
cg03443143 0.761103723404255 null
cg03683899 0.00125330733881075 null
cg03695421 0.792017042269313 null
cg03706273 0.00597224661865449 null

Total number of rows: 485512

Table truncated, full table size 16091 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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