NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1197682 Query DataSets for GSM1197682
Status Public on Jan 15, 2014
Title ChorionicVilli_Control_3rd_2
Sample type genomic
 
Source name placental chorionic villus
Organism Homo sapiens
Characteristics gestational age (weeks): 28
Sex: M
genotype: control
tissue: placental chorionic villus
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using the Dneasy Blood and Tissue kit (Qiagen) followed by bisufite conversion using the EZ DNA methylation kit (Zymo) following manufacturer's protocols.
Label Cy5 and Cy3
Label protocol Illumina HumanMethylation450 BeadChip Protocol
 
Hybridization protocol Illumina HumanMethylation450 BeadChip Protocol
Scan protocol Arrays were imaged using Illumina iScan on a two-color channel
Description NA
Data processing GenomeStudio 2011.1 software and R version 2.14.0
 
Submission date Jul 30, 2013
Last update date May 17, 2016
Contact name Wendy Robinson
E-mail(s) wprobinsonlab@gmail.com
Organization name University of British Columbia
Department Medical Genetics
Lab Robinosn
Street address 950 W 28th Ave
City Vancouver
State/province BC
ZIP/Postal code V5Z 4H4
Country Canada
 
Platform ID GPL13534
Series (1)
GSE49343 Overlapping DNA methylation profile between placentas with trisomy 16 and early-onset preeclampsia

Data table header descriptions
ID_REF
VALUE normalized Average Beta consisting of background subtraction in GenomeStudio, color correction (lumi Bioconductor package) and probe type correction (SWAN, bioconductor package).
PL112.Detection Pval

Data table
ID_REF VALUE PL112.Detection Pval
cg00000029 0.139636332 0
cg00000108 0.958808689 0
cg00000109 0.922925232 0
cg00000165 0.752466274 0
cg00000236 0.881864624 0
cg00000289 0.742235742 0
cg00000292 0.610134535 0
cg00000321 0.538936697 0
cg00000363 0.282490219 0
cg00000622 0.02767588 0
cg00000658 0.894207223 0
cg00000714 0.344024121 0
cg00000721 0.927279027 0
cg00000734 0.071150054 0
cg00000769 0.063618929 0
cg00000807 0.452152568 0
cg00000884 0.725971793 0
cg00000905 0.099955373 0
cg00000924 0.534022654 0
cg00000948 0.674645728 0

Total number of rows: 445398

Table truncated, full table size 10834 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap