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Sample GSM1194284 Query DataSets for GSM1194284
Status Public on Oct 08, 2016
Title NCI-H460
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: NCI-H460
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
NCI-H460.Detection Pval
NCI-H460.Signal_A
NCI-H460.Signal_B

Data table
ID_REF VALUE NCI-H460.Detection Pval NCI-H460.Signal_A NCI-H460.Signal_B
cg00000029 0.2690882 0.00 2735.355 1043.848
cg00000108 0.9355653 0.00 305.5146 5887.903
cg00000109 0.9005714 0.00 174.1719 2483.304
cg00000165 0.3426654 0.00 1774.555 977.1963
cg00000236 0.8685451 0.00 301.2317 2651.008
cg00000289 0.6146434 0.00 599.6082 1115.874
cg00000292 0.8489454 0.00 1069.301 6571.618
cg00000321 0.5847581 0.00 2792.461 4073.264
cg00000363 0.6996141 0.00 3659.037 8754.991
cg00000622 0.005692086 0.00 16359.31 94.22414
cg00000658 0.8200527 0.00 1403.369 6851.125
cg00000714 0.1247384 0.00 17317.26 2482.229
cg00000721 0.9353021 0.00 131.3427 3344.398
cg00000734 0.0721165 0.00 9623.711 755.7415
cg00000769 0.05540819 0.00 8330.356 494.5108
cg00000807 0.6856422 0.00 4646.963 10353.55
cg00000884 0.7873793 0.00 512.5222 2268.3
cg00000905 0.07223677 0.00 4138.724 330.0322
cg00000924 0.04560158 0.00 10384.64 500.9609
cg00000948 0.8581931 0.00 1317.71 8579.762

Total number of rows: 485577

Table truncated, full table size 20848 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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