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Sample GSM1194281 Query DataSets for GSM1194281
Status Public on Oct 08, 2016
Title MDA-MB-468
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics tissue: Breast
cell line: MDA-MB-468
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
MDA-MB-468.Detection Pval
MDA-MB-468.Signal_A
MDA-MB-468.Signal_B

Data table
ID_REF VALUE MDA-MB-468.Detection Pval MDA-MB-468.Signal_A MDA-MB-468.Signal_B
cg00000029 0.09866496 0.00 4235.827 474.6229
cg00000108 0.9046254 0.00 437.8096 5101.107
cg00000109 0.9224203 0.00 111.6139 2516.082
cg00000165 0.4652784 0.00 2332.888 2116.934
cg00000236 0.8727375 0.00 281.3929 2615.506
cg00000289 0.5950669 0.00 553.3536 960.1316
cg00000292 0.895185 0.00 870.9031 8292.111
cg00000321 0.8938609 0.00 509.3368 5131.587
cg00000363 0.278431 0.00 7438.047 2908.698
cg00000622 0.009627714 0.00 12513.34 122.6181
cg00000658 0.8434965 0.00 1327.577 7694.116
cg00000714 0.1085277 0.00 15780.79 1933.326
cg00000721 0.9308563 0.00 309.6894 5515.495
cg00000734 0.07720623 0.00 9476.18 801.1982
cg00000769 0.06798116 0.00 8586.029 633.5562
cg00000807 0.8193537 0.00 2505.811 11819.13
cg00000884 0.5617459 0.00 925.924 1315.01
cg00000905 0.1032336 0.00 2434.284 291.7407
cg00000924 0.8705744 0.00 1234.827 8978.646
cg00000948 0.4956883 0.00 7141.72 7117.892

Total number of rows: 485577

Table truncated, full table size 20856 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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